IL_6T7T_055

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6T7T|1|C1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_055 not in the Motif Atlas

Geometric match to IL_7A0S_019

Geometric discrepancy: 0.2372

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

6T7T|1|C1|G|1262
6T7T|1|C1|A|1263
6T7T|1|C1|G|1264
6T7T|1|C1|U|1265
6T7T|1|C1|G|1266
*
6T7T|1|C1|C|1275
6T7T|1|C1|U|1276
6T7T|1|C1|C|1277

Current chains

Chain C1

25S rRNA

Nearby chains