IL_6T7T_059

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

6T7T|1|C1|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_059 not in the Motif Atlas

Geometric match to IL_5TBW_060

Geometric discrepancy: 0.0902

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6T7T|1|C1|U|1398
6T7T|1|C1|A|1399
6T7T|1|C1|G|1400
*
6T7T|1|C1|C|1411
6T7T|1|C1|G|1412

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LE

60S ribosomal protein L6-B

Chain Le

60S ribosomal protein L32