IL_6T7T_065

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

6T7T|1|C1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_065 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3752

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

6T7T|1|C1|G|1623
6T7T|1|C1|G|1624
6T7T|1|C1|A|1625
*
6T7T|1|C1|U|1818
6T7T|1|C1|U|1819
6T7T|1|C1|U|1820
6T7T|1|C1|U|1821
6T7T|1|C1|C|1822

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34-A