3D structure

PDB id
6T7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCAG*CG
Length
6 nucleotides
Bulged bases
6T7T|1|C1|C|2197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T7T_083 not in the Motif Atlas
Geometric match to IL_4V9F_066
Geometric discrepancy: 0.1096
The information below is about IL_4V9F_066
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

6T7T|1|C1|C|2196
6T7T|1|C1|C|2197
6T7T|1|C1|A|2198
6T7T|1|C1|G|2199
*
6T7T|1|C1|C|2245
6T7T|1|C1|G|2246

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C2
Small subunit ribosomal RNA; SSU rRNA
Chain LA
60S ribosomal protein L2-A

Coloring options:


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