IL_6T7T_097

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_097 not in the Motif Atlas

Geometric match to IL_4WF9_098

Geometric discrepancy: 0.3382

The information below is about IL_4WF9_098

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6T7T|1|C1|G|2614
6T7T|1|C1|G|2615
*
6T7T|1|C1|C|2625
6T7T|1|C1|A|2626
6T7T|1|C1|C|2627

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L42-A