IL_6T7T_118

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

6T7T|1|C1|U|3078, 6T7T|1|C1|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_118 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.1203

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6T7T|1|C1|C|3063
6T7T|1|C1|U|3064
*
6T7T|1|C1|A|3077
6T7T|1|C1|U|3078
6T7T|1|C1|U|3079
6T7T|1|C1|G|3080

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain Ld

60S ribosomal protein L31-A