IL_6T7T_121

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_121 not in the Motif Atlas

Geometric match to IL_4KNQ_001

Geometric discrepancy: 0.1243

The information below is about IL_4KNQ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6T7T|1|C1|A|3168
6T7T|1|C1|U|3169
6T7T|1|C1|A|3170
*
6T7T|1|C1|U|3280
6T7T|1|C1|U|3281
6T7T|1|C1|U|3282

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lf

60S ribosomal protein L33-A