IL_6T7T_192

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

6T7T|1|C2|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_192 not in the Motif Atlas

Geometric match to IL_6CZR_148

Geometric discrepancy: 0.1772

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

6T7T|1|C2|G|1149
6T7T|1|C2|G|1150
6T7T|1|C2|A|1151
*
6T7T|1|C2|U|1627
6T7T|1|C2|U|1628

Current chains

Chain C2

18S rRNA

Nearby chains

Chain 5

mRNA

Chain Sa

40S ribosomal protein S26-B