IL_6T7T_226

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_226 not in the Motif Atlas

Geometric match to IL_5ZTM_001

Geometric discrepancy: 0.2812

The information below is about IL_5ZTM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6T7T|1|C2|U|1688
6T7T|1|C2|A|1689
6T7T|1|C2|G|1690
*
6T7T|1|C2|C|1711
6T7T|1|C2|A|1712
6T7T|1|C2|G|1713

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-A

Chain SG

40S ribosomal protein S6-A