IL_6T83_003

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6T83|1|1b|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_003 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1507

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6T83|1|1b|A|13
6T83|1|1b|U|14
6T83|1|1b|C|15
*
6T83|1|3b|G|144
6T83|1|3b|U|145

Current chains

Chain 1b

25S rRNA

Chain 3b

5.8S rRNA

Nearby chains

Chain Gy

60S ribosomal protein L8-A

Chain Ny

60S ribosomal protein L15-A

Chain Xy

60S ribosomal protein L25