IL_6T83_010

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

6T83|1|1b|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_010 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.3662

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6T83|1|1b|U|169
6T83|1|1b|G|170
*
6T83|1|1b|U|248
6T83|1|1b|U|249
6T83|1|1b|U|250
6T83|1|1b|G|251
6T83|1|1b|U|252
6T83|1|1b|A|253

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Gy

60S ribosomal protein L8-A

Chain Ly

60S ribosomal protein L13-A

Chain hb

60S ribosomal protein L35-A