IL_6T83_011

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_011 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.3275

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6T83|1|1b|U|177
6T83|1|1b|U|178
*
6T83|1|1b|A|238
6T83|1|1b|G|239
6T83|1|1b|U|240
6T83|1|1b|G|241

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ly

60S ribosomal protein L13-A

Chain hb

60S ribosomal protein L35-A

Chain jb

60S ribosomal protein L37-A