3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GUUUG*CAUAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_022 not in the Motif Atlas
Homologous match to IL_5TBW_022
Geometric discrepancy: 0.1623
The information below is about IL_5TBW_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74284.1
Basepair signature
cWW-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6T83|1|1b|G|680
6T83|1|1b|U|681
6T83|1|1b|U|682
6T83|1|1b|U|683
6T83|1|1b|G|684
*
6T83|1|1b|C|696
6T83|1|1b|A|697
6T83|1|1b|U|698
6T83|1|1b|A|699
6T83|1|1b|C|700

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain Cy
60S ribosomal protein L4-A
Chain Ly
60S ribosomal protein L13-A
Chain Ny
60S ribosomal protein L15-A
Chain ay
60S ribosomal protein L28

Coloring options:


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