IL_6T83_031

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_031 not in the Motif Atlas

Homologous match to IL_5TBW_031

Geometric discrepancy: 0.1236

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6T83|1|1b|G|869
6T83|1|1b|G|870
6T83|1|1b|U|871
6T83|1|1b|U|872
*
6T83|1|1b|A|888
6T83|1|1b|U|889
6T83|1|1b|C|890

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain jb

60S ribosomal protein L37-A