IL_6T83_041

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_041 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.2035

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6T83|1|1b|A|1006
6T83|1|1b|U|1007
6T83|1|1b|U|1008
6T83|1|1b|A|1009
*
6T83|1|1b|U|1041
6T83|1|1b|U|1042
6T83|1|1b|C|1043
6T83|1|1b|U|1044

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Dy

60S ribosomal protein L5

Chain Iy

60S ribosomal protein L10