3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
AAG*CCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_074 not in the Motif Atlas
Homologous match to IL_5TBW_075
Geometric discrepancy: 0.1356
The information below is about IL_5TBW_075
Detailed Annotation
Isolated tWW turn
Broad Annotation
No text annotation
Motif group
IL_54997.8
Basepair signature
cWW-tWW-cWW
Number of instances in this motif group
8

Unit IDs

6T83|1|1b|A|1895
6T83|1|1b|A|1896
6T83|1|1b|G|1897
*
6T83|1|1b|C|2338
6T83|1|1b|C|2339
6T83|1|1b|U|2340

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain By
60S ribosomal protein L3
Chain Vy
60S ribosomal protein L23-A
Chain Wy
60S ribosomal protein L24-A

Coloring options:


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