IL_6T83_085

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

6T83|1|1b|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_085 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.5291

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6T83|1|1b|G|2206
6T83|1|1b|A|2207
6T83|1|1b|A|2208
6T83|1|1b|U|2209
6T83|1|1b|G|2210
*
6T83|1|1b|C|2235
6T83|1|1b|G|2236
6T83|1|1b|C|2237

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain Ay

60S ribosomal protein L2-A

Chain Ba

40S ribosomal protein S1-A