IL_6T83_092

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6T83|1|1b|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_092 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.128

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6T83|1|1b|G|2412
6T83|1|1b|A|2413
*
6T83|1|1b|U|2807
6T83|1|1b|A|2808
6T83|1|1b|C|2809
6T83|1|1b|C|2810

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 6b

Transfer RNA; tRNA

Chain Ay

60S ribosomal protein L2-A