IL_6T83_111

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6T83|1|1b|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_111 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.263

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6T83|1|1b|C|2960
6T83|1|1b|G|2961
*
6T83|1|1b|C|2970
6T83|1|1b|A|2971
6T83|1|1b|G|2972

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 6b

Transfer RNA; tRNA

Chain Ay

60S ribosomal protein L2-A

Chain Iy

60S ribosomal protein L10