IL_6T83_129

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGG*UUUG

Length

7 nucleotides

Bulged bases

6T83|1|1b|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_129 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2537

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6T83|1|1b|C|3324
6T83|1|1b|G|3325
6T83|1|1b|G|3326
*
6T83|1|1b|U|3380
6T83|1|1b|U|3381
6T83|1|1b|U|3382
6T83|1|1b|G|3383

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain By

60S ribosomal protein L3

Chain dy

60S ribosomal protein L31-A