IL_6T83_144

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_144 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1752

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6T83|1|2b|U|117
6T83|1|2b|U|118
6T83|1|2b|A|119
6T83|1|2b|U|120
6T83|1|2b|U|121
6T83|1|2b|U|122
*
6T83|1|2b|A|295
6T83|1|2b|U|296
6T83|1|2b|U|297
6T83|1|2b|C|298
6T83|1|2b|A|299

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S4-A

Chain Ib

40S ribosomal protein S8-A