3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GUA*UUUUC
Length
8 nucleotides
Bulged bases
6T83|1|2b|U|260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_148 not in the Motif Atlas
Geometric match to IL_7RQB_022
Geometric discrepancy: 0.2503
The information below is about IL_7RQB_022
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
Major groove platform
Motif group
IL_05564.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
14

Unit IDs

6T83|1|2b|G|204
6T83|1|2b|U|205
6T83|1|2b|A|206
*
6T83|1|2b|U|259
6T83|1|2b|U|260
6T83|1|2b|U|261
6T83|1|2b|U|262
6T83|1|2b|C|263

Current chains

Chain 2b
18S rRNA

Nearby chains

Chain Eb
40S ribosomal protein S4-A
Chain Ib
40S ribosomal protein S8-A

Coloring options:


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