IL_6T83_154

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_154 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.4891

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

6T83|1|2b|U|318
6T83|1|2b|U|319
6T83|1|2b|U|320
6T83|1|2b|C|321
6T83|1|2b|G|322
6T83|1|2b|A|323
*
6T83|1|2b|U|345
6T83|1|2b|G|346

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain 1b

Large subunit ribosomal RNA; LSU rRNA

Chain Ib

40S ribosomal protein S8-A

Chain Lb

40S ribosomal protein S11-A

Chain Ry

60S ribosomal protein L19-A