IL_6T83_155

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_155 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.1965

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6T83|1|2b|G|363
6T83|1|2b|G|364
6T83|1|2b|G|365
*
6T83|1|2b|C|376
6T83|1|2b|G|377
6T83|1|2b|A|378
6T83|1|2b|U|379
6T83|1|2b|U|380
6T83|1|2b|C|381

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S4-A

Chain Jb

40S ribosomal protein S9-A

Chain Xb

40S ribosomal protein S23-A