3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CGUAGU*AUCAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_170 not in the Motif Atlas
Geometric match to IL_8ZA4_001
Geometric discrepancy: 0.3862
The information below is about IL_8ZA4_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_76308.6
Basepair signature
cWW-tSH-tHW-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6T83|1|2b|C|627
6T83|1|2b|G|628
6T83|1|2b|U|629
6T83|1|2b|A|630
6T83|1|2b|G|631
6T83|1|2b|U|632
*
6T83|1|2b|A|967
6T83|1|2b|U|968
6T83|1|2b|C|969
6T83|1|2b|A|970
6T83|1|2b|A|971
6T83|1|2b|G|972

Current chains

Chain 2b
18S rRNA

Nearby chains

Chain 1b
Large subunit ribosomal RNA; LSU rRNA
Chain Lb
40S ribosomal protein S11-A
Chain Nb
40S ribosomal protein S13
Chain Wb
40S ribosomal protein S22-A
Chain Xb
40S ribosomal protein S23-A

Coloring options:


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