IL_6T83_178

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6T83|1|2b|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_178 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.2492

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T83|1|2b|G|868
6T83|1|2b|A|869
6T83|1|2b|C|870
*
6T83|1|2b|G|957
6T83|1|2b|U|958
6T83|1|2b|U|959
6T83|1|2b|U|960

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Nb

40S ribosomal protein S13

Chain bb

40S ribosomal protein S27-A

Chain cy

60S ribosomal protein L30