IL_6T83_195

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_195 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1617

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6T83|1|2b|G|1213
6T83|1|2b|U|1214
6T83|1|2b|C|1215
*
6T83|1|2b|G|1448
6T83|1|2b|U|1449
6T83|1|2b|U|1450

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Kb

40S ribosomal protein S10-A

Chain Pb

40S ribosomal protein S15

Chain db

40S ribosomal protein S29-A

Chain fb

Ubiquitin-40S ribosomal protein S31