IL_6T83_218

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_218 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.2105

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T83|1|2b|U|1650
6T83|1|2b|A|1651
6T83|1|2b|C|1652
*
6T83|1|2b|G|1748
6T83|1|2b|A|1749
6T83|1|2b|A|1750

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain 1b

Large subunit ribosomal RNA; LSU rRNA

Chain Xb

40S ribosomal protein S23-A

Chain nb

60S ribosomal protein L41-A