IL_6T83_243

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

6T83|1|Aa|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_243 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.1961

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6T83|1|Aa|A|123
6T83|1|Aa|U|124
*
6T83|1|Aa|A|144
6T83|1|Aa|G|145
6T83|1|Aa|U|146
6T83|1|Aa|U|147
6T83|1|Aa|G|148
6T83|1|Aa|U|149

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ca

5.8S ribosomal RNA; 5.8S rRNA

Chain Ja

60S ribosomal protein L8-A

Chain Pa

60S ribosomal protein L15-A