IL_6T83_253
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- 6T83|1|Aa|A|440, 6T83|1|Aa|G|494
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T83_253 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.4999
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
6T83|1|Aa|C|435
6T83|1|Aa|A|436
6T83|1|Aa|G|437
6T83|1|Aa|A|438
6T83|1|Aa|C|439
6T83|1|Aa|A|440
6T83|1|Aa|G|494
6T83|1|Aa|G|495
*
6T83|1|Aa|C|618
6T83|1|Aa|A|619
6T83|1|Aa|U|620
6T83|1|Aa|A|621
6T83|1|Aa|A|622
6T83|1|Aa|U|623
6T83|1|Aa|G|624
Current chains
- Chain Aa
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L17-A
- Chain Ha
- 60S ribosomal protein L6-A
- Chain P
- 60S ribosomal protein L32
- Chain Q
- 60S ribosomal protein L33-A
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