IL_6T83_262

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_262 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1726

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6T83|1|Aa|C|758
6T83|1|Aa|U|759
6T83|1|Aa|G|760
6T83|1|Aa|A|761
6T83|1|Aa|U|762
6T83|1|Aa|G|763
*
6T83|1|Aa|C|768
6T83|1|Aa|G|769
6T83|1|Aa|G|770
6T83|1|Aa|A|771
6T83|1|Aa|U|772
6T83|1|Aa|G|773

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L28

Chain Na

60S ribosomal protein L13-A

Chain Z

60S ribosomal protein L42-A