IL_6T83_263

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_263 not in the Motif Atlas

Homologous match to IL_5TBW_027

Geometric discrepancy: 0.1405

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T83|1|Aa|C|803
6T83|1|Aa|C|804
6T83|1|Aa|G|805
*
6T83|1|Aa|C|938
6T83|1|Aa|U|939
6T83|1|Aa|G|940

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Fa

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L28