IL_6T83_273

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

6T83|1|Aa|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_273 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.3966

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6T83|1|Aa|C|977
6T83|1|Aa|G|978
6T83|1|Aa|U|979
6T83|1|Aa|A|980
6T83|1|Aa|U|981
6T83|1|Aa|C|982
*
6T83|1|Aa|G|1101
6T83|1|Aa|A|1102
6T83|1|Aa|A|1103
6T83|1|Aa|G|1104

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L18-A

Chain Ia

60S ribosomal protein L7-A

Chain M

60S ribosomal protein L29