IL_6T83_291

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6T83|1|Aa|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_291 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4116

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6T83|1|Aa|G|1234
6T83|1|Aa|U|1235
6T83|1|Aa|G|1236
6T83|1|Aa|G|1237
6T83|1|Aa|C|1238
*
6T83|1|Aa|G|1250
6T83|1|Aa|A|1251
6T83|1|Aa|A|1252
6T83|1|Aa|U|1253
6T83|1|Aa|C|1254

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain ba

60S acidic ribosomal protein P0