IL_6T83_292

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6T83|1|Aa|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_292 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2722

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6T83|1|Aa|G|1262
6T83|1|Aa|A|1263
6T83|1|Aa|G|1264
6T83|1|Aa|U|1265
6T83|1|Aa|G|1266
*
6T83|1|Aa|C|1275
6T83|1|Aa|U|1276
6T83|1|Aa|C|1277

Current chains

Chain Aa

25S rRNA

Nearby chains