IL_6T83_294

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

6T83|1|Aa|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_294 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.2048

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6T83|1|Aa|C|1385
6T83|1|Aa|A|1386
6T83|1|Aa|G|1387
*
6T83|1|Aa|C|1420
6T83|1|Aa|G|1421

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ca

5.8S ribosomal RNA; 5.8S rRNA

Chain Fa

60S ribosomal protein L4-A

Chain Ha

60S ribosomal protein L6-A

Chain P

60S ribosomal protein L32