IL_6T83_320

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

6T83|1|Aa|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_320 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.1615

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6T83|1|Aa|C|2196
6T83|1|Aa|C|2197
6T83|1|Aa|A|2198
6T83|1|Aa|G|2199
*
6T83|1|Aa|C|2245
6T83|1|Aa|G|2246

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Da

60S ribosomal protein L2-A

Chain a

Small subunit ribosomal RNA; SSU rRNA