IL_6T83_344

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_344 not in the Motif Atlas

Geometric match to IL_4KNQ_002

Geometric discrepancy: 0.1279

The information below is about IL_4KNQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6T83|1|Aa|C|2889
6T83|1|Aa|A|2890
6T83|1|Aa|U|2891
*
6T83|1|Aa|G|2912
6T83|1|Aa|C|2913
6T83|1|Aa|G|2914

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ea

60S ribosomal protein L3

Chain G

60S ribosomal protein L23-A

Chain Qa

60S ribosomal protein L16-A