IL_6T83_345

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

6T83|1|Aa|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_345 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.161

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6T83|1|Aa|U|2891
6T83|1|Aa|A|2892
*
6T83|1|Aa|U|2909
6T83|1|Aa|A|2910
6T83|1|Aa|A|2911
6T83|1|Aa|G|2912

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ka

60S ribosomal protein L9-A

Chain Qa

60S ribosomal protein L16-A

Chain X

Ubiquitin-60S ribosomal protein L40