IL_6T83_443
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGGC*GUCUGUGA
- Length
- 12 nucleotides
- Bulged bases
- 6T83|1|a|U|1432, 6T83|1|a|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T83_443 not in the Motif Atlas
- Geometric match to IL_5J7L_010
- Geometric discrepancy: 0.3172
- The information below is about IL_5J7L_010
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6T83|1|a|U|1276
6T83|1|a|G|1277
6T83|1|a|G|1278
6T83|1|a|C|1279
*
6T83|1|a|G|1429
6T83|1|a|U|1430
6T83|1|a|C|1431
6T83|1|a|U|1432
6T83|1|a|G|1433
6T83|1|a|U|1434
6T83|1|a|G|1435
6T83|1|a|A|1436
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain 4
- 40S ribosomal protein S29-A
- Chain e
- 40S ribosomal protein S3
- Chain l
- 40S ribosomal protein S10-A
- Chain v
- 40S ribosomal protein S20
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