IL_6T83_454

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_454 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1538

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6T83|1|a|G|1540
6T83|1|a|G|1541
6T83|1|a|G|1542
6T83|1|a|A|1543
6T83|1|a|U|1544
6T83|1|a|A|1545
*
6T83|1|a|U|1566
6T83|1|a|U|1567
6T83|1|a|C|1568
6T83|1|a|A|1569
6T83|1|a|A|1570
6T83|1|a|C|1571

Current chains

Chain a

18S rRNA

Nearby chains

Chain t

40S ribosomal protein S18-A

Chain u

40S ribosomal protein S19-A