IL_6T83_469

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

6T83|1|1b|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_469 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2577

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6T83|1|1b|G|833
6T83|1|1b|U|834
6T83|1|1b|G|835
6T83|1|1b|A|836
6T83|1|1b|A|837
6T83|1|1b|G|838
*
6T83|1|1b|U|855
6T83|1|1b|G|856
6T83|1|1b|G|857
6T83|1|1b|A|858
6T83|1|1b|G|859
6T83|1|1b|G|860
6T83|1|1b|C|861

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ay

60S ribosomal protein L2-A

Chain Ry

60S ribosomal protein L19-A

Chain pb

60S ribosomal protein L43-A