IL_6T83_471

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUCCGG*UUGA

Length

10 nucleotides

Bulged bases

6T83|1|1b|C|1016, 6T83|1|1b|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_471 not in the Motif Atlas

Geometric match to IL_7DLZ_006

Geometric discrepancy: 0.3925

The information below is about IL_7DLZ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76776.4

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6T83|1|1b|U|1014
6T83|1|1b|U|1015
6T83|1|1b|C|1016
6T83|1|1b|C|1017
6T83|1|1b|G|1018
6T83|1|1b|G|1019
*
6T83|1|1b|U|1033
6T83|1|1b|U|1034
6T83|1|1b|G|1035
6T83|1|1b|A|1036

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Jy

60S ribosomal protein L11-A