IL_6T83_473

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6T83|1|1b|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_473 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1302

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6T83|1|1b|G|1898
6T83|1|1b|G|1899
6T83|1|1b|A|1900
6T83|1|1b|A|1901
6T83|1|1b|G|1902
6T83|1|1b|U|1903
6T83|1|1b|C|1904
6T83|1|1b|G|1905
6T83|1|1b|G|1906
*
6T83|1|1b|C|2333
6T83|1|1b|U|2334
6T83|1|1b|G|2335
6T83|1|1b|U|2336
6T83|1|1b|C|2337

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain By

60S ribosomal protein L3

Chain Vy

60S ribosomal protein L23-A