IL_6T83_474

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUGGU*AUGUUGACG

Length

16 nucleotides

Bulged bases

6T83|1|1b|U|2159, 6T83|1|1b|U|2175, 6T83|1|1b|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_474 not in the Motif Atlas

Geometric match to IL_4WF9_069

Geometric discrepancy: 0.3605

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6T83|1|1b|C|2156
6T83|1|1b|G|2157
6T83|1|1b|A|2158
6T83|1|1b|U|2159
6T83|1|1b|G|2160
6T83|1|1b|G|2161
6T83|1|1b|U|2162
*
6T83|1|1b|A|2172
6T83|1|1b|U|2173
6T83|1|1b|G|2174
6T83|1|1b|U|2175
6T83|1|1b|U|2176
6T83|1|1b|G|2177
6T83|1|1b|A|2178
6T83|1|1b|C|2179
6T83|1|1b|G|2180

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain Ay

60S ribosomal protein L2-A

Chain pb

60S ribosomal protein L43-A