IL_6T83_480

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6T83|1|2b|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_480 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2328

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6T83|1|2b|U|893
6T83|1|2b|U|894
6T83|1|2b|G|895
6T83|1|2b|U|896
6T83|1|2b|C|897
6T83|1|2b|A|898
6T83|1|2b|G|899
*
6T83|1|2b|C|910
6T83|1|2b|U|911
6T83|1|2b|U|912
6T83|1|2b|G|913
6T83|1|2b|G|914
6T83|1|2b|A|915
6T83|1|2b|U|916
6T83|1|2b|U|917
6T83|1|2b|U|918
6T83|1|2b|A|919

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain 1b

Large subunit ribosomal RNA; LSU rRNA

Chain Ba

40S ribosomal protein S1-A

Chain Ob

40S ribosomal protein S14-A