IL_6T83_500

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_500 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2486

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6T83|1|a|C|1209
6T83|1|a|C|1210
*
6T83|1|a|G|1453
6T83|1|a|G|1454
6T83|1|a|G|1455

Current chains

Chain a

18S rRNA

Nearby chains

Chain 4

40S ribosomal protein S29-A

Chain 6

Ubiquitin-40S ribosomal protein S31

Chain q

40S ribosomal protein S15

Chain t

40S ribosomal protein S18-A