IL_6T83_503

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

6T83|1|1b|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_503 not in the Motif Atlas

Homologous match to IL_8P9A_358

Geometric discrepancy: 0.2024

The information below is about IL_8P9A_358

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6T83|1|1b|C|3324
6T83|1|1b|G|3325
*
6T83|1|1b|U|3381
6T83|1|1b|U|3382
6T83|1|1b|G|3383

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain By

60S ribosomal protein L3

Chain dy

60S ribosomal protein L31-A