IL_6TB3_042

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_042 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1219

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6TB3|1|2|A|865
6TB3|1|2|G|866
*
6TB3|1|2|C|962
6TB3|1|2|A|963
6TB3|1|2|U|964
6TB3|1|2|U|965

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A

Chain f

40S ribosomal protein S27-A