IL_6TB3_049
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_049 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.0726
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6TB3|1|2|G|985
6TB3|1|2|G|986
6TB3|1|2|G|987
6TB3|1|2|A|988
6TB3|1|2|U|989
6TB3|1|2|C|990
*
6TB3|1|2|G|1014
6TB3|1|2|U|1015
6TB3|1|2|C|1016
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 40S ribosomal protein S14-B
- Chain e
- 40S ribosomal protein S26-B
Coloring options: